The theft of gold, valued at about Rs four crore, surfaced during inspection of vaults by Stock Taking Committee between January 9 to February 21 this year.
The agency has registered a case of theft against unidentified persons.
This case is in addition to over 38 kg of missing gold reported earlier in which the CBI has already registered FIRs.
The committee during its inspection this year found that about 15.9 kg of gold valued at approximately Rs four crore (as per present rates) was missing, the FIR alleged.
The department keeps gold seized by it in packets in its vaults. It was alleged that the precious material was replaced with non-valuable material by unknown persons.
A Stock Taking Committee was constituted to analyse valuable items held at customs godown at the airport which found that in a large number of cases the seized gold was missing or was replaced by non-valuable metal.
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