In his complaint lodged before the ACB, Aires Rodrigues accused Naik, a BJP MLA, of fraudulently investing for business the loan he had secured from state secretariat to buy a flat.
Rodrigues told police that the "minister misused a housing loan scheme for purchasing commercial property" and that the fraud is worth Rs 30 lakh.
When contacted, Naik refuted the allegations.
"I am ready to face any inquiry. I have paid back the entire amount," he told PTI.
"We have to investigate the complaint only after recording statement of the minister," he said.
Police have also decided to get all the relevant documents from the minister.
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