Mohamed's trip comes just two days after Foreign Secretary S Jaishankar visited Maldives on the concluding leg of his 'SAARC yatra' aimed at firming up India's ties with the grouping's members.
A number of issues figured in the meeting between Swaraj and Mohamed.
Prime Minister Narendra Modi had chosen not to go ahead with visiting Maldives during his trip to a number of nations in the region in March following political unrest in that country.