The announcement is almost certain to irritate the former Communist states of Eastern Europe and add another layer to the tensions in Moscow's fraught relations with Washington.
The advanced version of the Russian missile has a range of 500 kilometres (310 miles) and could potentially be used to take out ground-based radar and interceptors of the new NATO shield.
Germany's Bild newspaper first reported over the weekend that Russia had deployed about 10 Iskander systems in its Kaliningrad exclave, wedged between Poland and Lithuania, at some point over the past 12 months.
"Iskander operational-tactical missile systems have indeed been commissioned by the Western Military District's missile and artillery forces," Russian news agencies quoted defence ministry spokesman Igor Konashenkov as saying.
He added that Russia's deployment "does not violate any international treaties or agreements" and should therefore not be subject to protests from the West.
The Kremlin warned in 2011 that it could station the short- and medium-range ballistic missiles along the European Union's eastern frontier in response to NATO's missile defence programme.
But Moscow fears the system -- whose components include missile-positioning satellites -- may one day be turned into an offensive weapon that targets Russian soil.
The Kremlin also believes the shield could in the future be expanded to a point that makes Russia's own vast nuclear arsenal ineffective.
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