In the northern battleground state of Unity, thousands of civilians are trekking through the vast Sudd swamplands to reach the village of Nyal, away from fighting.
"About 10 canoes, each carrying 60 to 70 people, have arrived in Nyal on a daily basis since mid-August," the UN office for the Coordination of Humanitarian Affairs (OCHA) said in its latest report.
At least 18,000 people have arrived in Nyal in the past two weeks, taking the total there to more than 78,000 civilians, the report added.
Some 1.64 million people have fled fighting inside the country, another 628,000 have fled as refugees into neighbouring nations, while over 4.6 million people are now dependent on food aid.
The army and rebels have repeatedly traded blame accusing each other of breaking an August 29 ceasefire deal, the eighth such agreement to have been signed since civil war broke out in December 2013.
Despite the fighting, both sides say the political deal remains in place.
"Malnutrition remains a major concern across the country," the UN report added.
The world's youngest nation, South Sudan descended into bloodshed in December 2013 when President Salva Kiir accused his former deputy Riek Machar of planning a coup.
The violence has left tens of thousands of people dead and the impoverished country split along ethnic lines.
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