It alleged that the district judges, who were locals, had conducted the judicial inquiries into the alleged killings and local factors came in the way of the probe reports which went against the armed forces.
"The problem in every case is that the slant of judicial inquiry was against us. Judicial inquiries which have been done by a district judge proceeded against us by the virtue of their local apprehensions or local positions. Army's job is not to kill its own people," Attorney General Mukul Rohatgi told a bench of Justices M B Lokur and U U Lalit.
"We are in our own country. If army is disbelieved, then the whole system will go haywire and cannot work. The inquiry officers were biased due to their local considerations," Rohatgi said, adding the judicial probes were not conducted by the High Court which had tasked the district judges to inquire into the allegations of extra-judicial killings.
He said the Army in Manipur was operating in a very difficult situation and needed to be trusted as it cannot stage-manage the killing of its own people.
To this, the bench said "compensation cannot be a substitute for everything".
Rohatgi responded to the remark saying none of the kin of the victims have complained and compensation was paid to their satisfaction.
"In criminal law, victim compensation is immaterial and the victim satisfaction can only be considered when there are compoundable offences," the bench said.
Rohatgi cited the case of Thangjam Manorama, a Manipuri woman who was allegedly killed in the custody of the Assam Rifles on July 10, 2004, after being picked up on suspicion of working for the People Liberation Army (PLA).
He said the appeal in the case was still pending in apex court which had directed an ad hoc compensation of Rs 10 lakh to be given to the kin of victim.
Rohatgi said there were variations in the findings over the sequence of arrest given in the reports of judicial inquiry and Court of Inquiry (CoI) in the Manorama case.
"If we are to believe that the inquiry reports was biased then we need to be satisfied from all aspects," the court said. The hearing remained inconclusive and will continue tomorrow.
The apex court had yesterday pulled up the Army asking why it had remained silent over allegations of rape and murder against its personnel in Manipur and questioned the state government for not proceeding with these cases against them.
The court is hearing a PIL seeking probe and compensation in alleged 1,528 extra-judicial killings in Manipur from 2000 to 2012 by security forces and police.
During the hearing, the court was earlier told that there were 265 cases of deaths which have to be examined and there were various reports of the commission of inquiry in which serious allegations have been levelled against armed forces personnel.
It had also asked the Manipur government to separate the cases relating to the state police.
There are 35 matters related to commission of inquiry and 37 cases of judicial inquiry or high court matters. Similarly, 23 matters of National Human Rights Commission would be heard along with 170 cases based on written complaints.
The Centre had said that out of the 282 cases, which were referred to it for verification, 70 matters were found to be related to the Army and Assam Rifles, while the rest concerned the state police.
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