Samson tendered her resignation from the post on September 30, which was in turn accepted by the Culture Ministry, Union Minister of State for Culture Shripad Yesso Naik said.
"We received her resignation on September 30 and it has been accepted by the ministry," he said.
However, Naik did not disclose the reason for Samson taking the step.
Samson, 62, who is also the Censor Board chairperson, was not available for comment.
She was the 12th Chairperson of the Akademi, which is serving as the apex institution of performing arts in the country.
Her resignation comes at a time when the term of the general council members ended in July, leaving the autonomous body of the Ministry of Culture, only with a few in the Executive Board.
According to Shanta Serbjeet Singh, former vice-chairman of Sangeet Natak Akademi, the President, on the recommendations of the government, nominates the chairman of the Akademi.
SNA is the national academy of India for music, dance and drama.
