Hundreds of police and soldiers ringed the northern flashpoint neighbourhood of Mutakura in the capital Bujumbura early Sunday to start of a widely feared crackdown on "enemies of the nation."
Residents said security forces were carrying out house-to-house searches.
"The police started the search operation for hidden weapons in Mutakura," city mayor Freddy Mbonimpa said, adding the raids were being "done professionally, because the police are using weapon detectors."
The mayor said seven people were killed and two wounded in an "execution" attack adding that a probe had been launched to track the "assassins."
Gunmen late Saturday shot dead at least seven people and wounded two others in an attack on a bar in an opposition Bujumbura neighbourhood.
Witnesses said attackers, wearing police uniforms, stormed into the bar, forcing those drinking outside to enter and lie on the ground before opening fire.
Burundi has been hit by waves of violence triggered by President Pierre Nkurunziza's successful bid to change the constitution and win a third term in office, with bodies found dumped in the streets on a nearly daily basis.
But one resident of Mutakura district, who asked not to be named, said that while many had fled ahead of the security operation, "mostly men have stayed behind to protect their belongings."
The security warnings have sparked intense fear.
"I was terrified, I understood that this time they would kill every last one of us," said Marie, a secretary in her forties who fled Mutakura on Saturday, taking her five children to a relative's house in a calmer part of the capital.
At least 200 people have died in the latest turmoil and 200,000 have fled the country, sparking fears that the violence could spiral into mass bloodletting.
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