The group was made up of men, mostly young, some of whom had spent most of their lives living outside of Afghanistan before being deported, an IOM spokeswoman, who went to Kabul International Airport to greet them, told AFP.
According to German regional television station WDR, the chartered flight departed Dsseldorf late yesterday.
Initially, 80 Afghan asylum seekers were meant to be on board, but last-minute claims and cases of illness reduced the number, a German relief association told AFP.
Germany, which has repatriated its diplomatic staff from Afghanistan with the exception of the ambassador accommodated in the US embassy, says Afghanistan is safe enough for the rejected asylum seekers.
But the expulsions come amid high tensions in Afghanistan, with civilian casualties at record highs and increased threats of attacks in recent days.
A large hotel in Kabul was the target of a bloody weekend assault claimed by the Taliban, with at least 22 people killed, most of them foreigners.
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