The Human Rights Commission of Pakistan described the Council's decision as "regressive" and "unkind to rape victims".
In a statement, the Commission said: "HRCP wants to unequivocally state that the latest pronouncement of the CII is regressive, brings no credit to this body and certainly not to the country, but most important of all it is exceptionally insensitive and unkind to rape victims."
Rape is a "horrendous crime, which is far too common in Pakistan", HRCP said.
"Rather than benefiting from scientific advances through DNA tests, which have proven to be an accurate method for identification, CII suggests discarding that without any prudent reason," it said.
The Council of Islamic Ideology, a constitutional body that advises the Pakistan government, announced on Wednesday that DNA tests cannot be used as primary evidence in rape cases.
The HRCP has long voiced support for those who find themselves in the dock because of corrupt, inefficient and tardy police and administration of justice systems.
"DNA results, however, have proven to be an irrefutable tool in helping to conclude guilt beyond reasonable doubt. Refuting its importance and much more crucially, suggesting that it is made inadmissible as primary evidence helps the rapist and no one else," the HRCP said.
It further said the Council of Islamic Ideology's recommendation refuses to take into account the rights of rape victims and the need to punish criminals who are proven guilty beyond doubt.
"At the very least, the pitiable fact that this entirely uncalled for recommendation did not encounter opposition in the CII is ground enough for urgent reconstitution of the CII in an inclusive manner with wide consultation," it added.
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