The Southeast Asian nation saw a 140 per cent increase in new cases from 2010 to 2016, even though the annual number of new infections in Asia-Pacific declined by 13 per cent over the same period, according to the report.
"The Philippines has a small window of opportunity to act now and stop a major HIV epidemic from taking hold," Eamonn Murphy, director of UNAIDS Regional Support Team said in a statement.
He called on the government to focus anti-HIV efforts on those at most risk.
"Risky behaviours are starting very young," she said, adding that the MSM group on average started having sex at 16, and anal sex at 17 before they have started using condoms or taken HIV tests, increasing the risk of infection.
The report also showed that only 35 percent of MSM had comprehensive knowledge of HIV transmission and prevention.
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