Private security guard Hayatullah Khan opened fire on the third secretary, Zaki Abdu, in the lobby of the Consulate in the high-security Clifton area after a personal disagreement between the two, according to the Deputy Inspector General (DIG) South Azad Khan.
"There is no terrorism element in this sad incident," DIG Khan told PTI.
"This is not a premeditated act neither a terrorist act. The guard opened fire on the spur of the moment after he lost his temper following an argument with the deceased over timings," the police official said.
The diplomat killed was the brother of Mohammad Abdul, an MP from northern Balkh province, Afghanistan's Tolo News reported.
Afghanistan's Ministry of Foreign Affairs was quoted by Khaama Press as saying that a delegation comprising of officials from the Afghan Embassy in Islamabad and Pakistani officials has been formed to probe the incident.
A statement by MoFA said the delegation has been sent to Karachi city to jointly probe the killing of diplomat.
The Afghan Consulate is located in the heavily secured and posh area of Clifton and the provincial government has deputed security outside the building.
Khan said Hayatullah has been taken into custody and investigations have begun.
The guard was an Afghan national employed by the Consulate. Police cleared the Consulate building for resumption of work after a thorough search.
Security of the area has been increased after the incident, a Sindh government official said.
Afghan ambassador to Pakistan Omar Zakhilwal was quoted by The Express Tribune as saying that it was not an act of terrorism.
"It seems to be a personal dispute related criminal act," Zakhilwal said.
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