An Israeli military source said the strikes targeted militants who fired rockets into Israel yesterday.
"Aircraft of the Israeli enemy targeted a civilian car in the village of al-Kom, killing five unarmed civilians," Syrian state television said.
A reporter for state television in the Quneitra province where the raids took place said they occurred at 10:30 am and were carried out by a drone.
The Syrian Observatory for Human Rights, a British-based monitoring group, also confirmed five people had been killed, saying two pro-regime militiamen were among them.
An Israeli military source confirmed the today raids, saying "part of the squad responsible for firing the rockets yesterday was targeted and neutralised".
The source said the raids were believed to have killed four or five people.
He said the group targeted was "part of the (Palestinian militant group) Islamic Jihad in Syria, acting under the supervision of Iran."
Syrian state media reported two sets of Israeli raids yesterday, saying the first hit local government buildings and caused damage but no deaths.
The Observatory however said the second set of raids killed two soldiers and wounded another eight.
The Golan Heights plateau is divided between Israeli and Syrian control.
Israel seized 1,200 square kilometres of the plateau from Syria in the 1967 Middle East war and annexed it 14 years later, in a move never recognised by the international community.
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