The Spanish giants welcomed back Messi after a bout of kidney stones and the mercurial Argentine scored with a clinical finish on 36 minutes, before a lethal Luis Suarez double destroyed River's hopes in a spiky Yokohama final.
"We came here to win the title and it was important to get the job done," said the prolific Suarez, who picked up the player of the tournament and golden boot awards after finishing with five goals.
Neymar, himself returning to the side after a groin strain, was instrumental in Barcelona's opener, climbing to knock down a Dani Alves cross for Messi to steer past River goalkeeper Marcelo Barovero with a deft flick of his left boot.
Suarez, who scored a hat-trick in Barca's 3-0 semi-final win over Guangzhou Evergrande, scored a second with a fierce low drive four minutes into the second half.
"Our aim is to win titles but what is also important is the style we do it in," said Barca coach Luis Enrique. "The process behind it is important to me.
- Gulf in class -
=================
River Plate's starting eleven cost a total of some six million dollars while Barcelona paid $85 million for Suarez alone, and the gulf in class showed.
The Catalans, who had already bagged the European Champions League, La Liga, the Copa del Rey and European Super Cup this year, tore River to shreds in the second half. Neymar also came close to scoring with a curling effort that shaved the bar.
Messi, who could himself have finished with a hat-trick, became the first player to score in three finals after leading Barca to victory in 2009 and 2011.
Along with captain Andres Iniesta, Messi also celebrated his 26th title with Barcelona as both players surpassed the 25 won by Xavi Hernandez.
"I'm delighted to make a little more history for this club," he said. "It's a difficult title to win but a massive one for Barcelona so we will celebrate this one."
"We had a plan but when Messi scored, it went out of the window," he said. "We let the fans down but we can be proud that we did our best. Barcelona were simply too good.
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