The visitors trail by another 255 runs.
At the break, Kohli was batting on 39 not out (51 balls, 6 fours) while Vijay was unbeaten on 31 runs (95 balls, 4 fours).
Post lunch, Vijay and KL Rahul (10) started watchfully against South Africas pacers. They added 28 runs for the opening stand.
Rahul had looked rusty, particularly against Morne Morkels (1-24) bounce, and only ended up returning a catch, which the bowler grabbed in a diving effort to the left.
Vijay too had a couple nervy moments against Vernon Philander (0-17) but managed to survive the spell. He then settled down to aid Kohli in Indias recovery.
India crossed 50 in the 16th over as Kohli looked in good touch from the very start. He set off with a flurry of boundaries and quickly outscored Vijay. The duo put on 50 runs off 101 balls.
Ngidi (0-6) bowled a fiery first four-over spell on Test debut, egged on by the home crowd, but he couldnt etch out a breakthrough before tea.
Starting from overnight 269/6, Faf du Plessis (63) and Keshav Maharaj (18) took their 7th wicket stand to 31 runs. India wasted their last DRS review early in the day as Jasprit Bumrah (0-60) looked for an early LBW call against Maharaj.
Mohammed Shami (1-58) bowled a lively spell and got the breakthrough with Maharaj caught behind in the 99th over.
South Africa then crossed 300 in the 106th over, while du Plessis reached his 17th Test half-century off 127 balls. In doing so, he put on 42 runs with Rabada (11).
India finally got the delayed breakthrough in the 111th over as Pandya held a smart catch off Ishant in the deep. Two overs later, Ishant also bowled du Plessis to change the course of the morning session again.
On day one, South Africa won the toss and chose to bat with the pitch surprising everyone with its flat nature. Aiden Markram scored 94 and Hashim Amla made 82.
South Africa won the first Test in Cape Town by 72 runs and lead the three-Test series 1-0.
Disclaimer: No Business Standard Journalist was involved in creation of this content
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