The decision to move the apex court was taken in view of complaints from various quarters that the rights of the 24- year-old woman were allegedly being violated, commission chairperson M C Josephine told reporters here.
The woman was sent back to her parents' house after the Kerala High Court recently annulled her marriage with the Muslim man, terming it as an instance of "love jihad".
Josephine said the commission had received representations from various organisations, seeking its intervention following allegations of violation of the woman's rights.
Since the matter was under the Supreme Court's consideration, the commission required its permission to meet the woman and her parents and file a fact-finding report before it, she added.
Josephine said the commission had received a legal opinion from an expert yesterday and based on it, it had decided to approach the top court.
"The commission is not interested in going after such a campaign. Such campaigns are not good. Such matters should be dealt strictly within the purview of law. All should cooperate to protect the democratic rights of the woman," Josephine said.
Directing the NIA to carry out an investigation into the incident under the supervision of a retired judge, the Supreme Court had said it wanted the probe to be fair.
The apex court had directed the NIA to submit its final investigation report before it.
Challenging the high court order, Shafin Jahan, who had married the woman in December 2016, had moved the Supreme Court.
It had been alleged that the woman was recruited by the Islamic State's mission in Syria and Jahan was only a stooge.
Ashokan K M, the woman's father, had alleged that there was a "well-oiled, systematic mechanism" for conversion and Islamic radicalisation in Kerala.
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