Both men praised the alliance, which Obama called the "foundation" of stability in the Asia-Pacific, a region where Tokyo and Beijing are facing off over territory, North Korea is threatening a nuclear test and Japan and South Korea are squabbling over history.
The "US-Japan alliance is the foundation not only for our security in the Asia-Pacific region but also for the region as a whole," the visiting US president said ahead of a formal summit.
The elephant in the room was China, which Japan and other Western-leaning countries say is throwing its weight around in pursuit of territorial claims in the East and South China Seas.
Along with Manila -- the fourth stop on Obama's tour -- Tokyo craves reassurance that the US is prepared to back it if push comes to shove with Beijing over their separate sovereignty rows.
That would come on top of a newspaper interview Obama gave in which he said the US would oppose any "unilateral attempts to undermine Japan's administration" of the islands.
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