The interim injunction from a late-night sitting applies at least until a hearing resumes this afternoon, and was granted after lawyers argued the transfer was illegal.
Refugee advocates claim the asylum-seekers have been deprived of the ability to have their claims for refugee status properly assessed, with their screening reportedly being carried out at sea via video link.
Lawyer George Newhouse said yesterday they were "entitled to have their claims for protection processed in accordance with Australian law."
There were claims that Australia could be breaking international law in the way it screened the passengers and by returning them involuntarily to a country in which they had a fear of persecution.
After a week of stonewalling, Canberra confirmed yesterday that one boatload of 41 Sri Lankans who attempted to reach Australia were handed back to Colombo on Sunday.
Under its policy of not commenting on "operational matters", Canberra has yet to confirm whether the second vessel, carrying 153 people, even exists.
They were being held in the notorious high-security Boossa prison yesterday and would appear before a magistrate today.
The nine children with them will also be brought before a magistrate, police spokesman Ajith Rohana told AFP, "but we won't press charges and we won't object to their being released," he added.
In a statement, the UN refugee agency UNHCR said it was "deeply concerned" by the decision to return the 41.
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