The Principal District and Sessions court at Manjeri passed the order on a PIL by the brother of slain Maoist leader Kuppuswamy Devaraj and some human rights activists, Public Prosecutor P Suresh said.
The authorities had no objection to the order to keep the bodies intact for seven days, he added.
In his interim order yesterday, Judge S S Vasan restrained police authorities from disposing of the bodies of Kuppuswamy Devaraj and Ajitha till today.
While the petitioners had claimed that the duo were killed in a "fake" encounter in the forests in Nilambur, the police had said they were killed in a retaliatory firing after the Maoists fired at them.
Devaraj, a central committee member of the outlawed outfit, and Ajitha were killed in an alleged encounter in the Nilambur forests in the district on November 24 during search operations by a 60-member elite team of the Thunderbolt Force, based on a tip-off that some Maoists were camping in the area.
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