The direction was issued by Thiruvananthapuram Special Vigilance Court Judge A Saffrudin on a petition by Vigilance Superintendent of Police R Sukeshan seeking further probe against Mani.
Sukeshan, the official who investigated the case earlier, also stated that former Vigilance Director Sankar Reddy had allegedly tried to sabotage the case by tampering the case diary.
The case related to the allegation by Kerala State Bar Hotel Owners Association Working President Biju Ramesh that the Association had paid Rs one crore bribe to Mani for getting favourable decision for reopening closed bars in 2013-14.
In his petition filed before the court today, Sukeshan alleged his investigation report was manipulated by then Vigilance Director Sankar Reddy.
Mani had left Congress led UDF early this month following differences with Congress over the bar bribery case issue.
The KC-M had alleged that bar case was a result of "conspiracy" by a section of Congress leaders.
Welcoming the further probe, Opposition Leader and former Home Minister Ramesh Chennithala said during his tenure, he had never interfered with the vigilance probe against Mani.
The court should look into who should conduct the probe, he said when asked if the further investigation should be entrusted to an official other than Sukeshan.
While KPCC President V M Sudheeran said Sukeshan, who had lost his "credibility" should not be entrusted with the investigation, BJP state president Kummanam Rajashekharan wanted a comprehensive probe to bring out truth in the case.
Achutanandan said a criminal case should be initiated against Sankar Reddy.
(Reopens LGM1)
Reacting to the court order, Mani said he will face the probe "courageously".
Describing the new development as "strange", he charged that Sukeshan was an officer who frequently contradicted his own reports.
"Sukeshan has now stated that he had changed his version earlier due to pressure from senior officers. Now the same official has filed a petition seeking further probe. He is an officer without conscience", Mani alleged.
"A person arrayed as an accused is presumed to be innocent until the charges are proved", Mani said referring to the statements of various political leaders that he was corrupt.
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