Shivam Patel, 27, of Norfolk was charged for not disclosing on his application to join the Army that he had travelled to China or Jordan.
He claimed he had not gone anywhere outside the US in the past seven years, except for a family trip to India in 2011- 12, a report in The Virginian Pilot said, quoting a court affidavit.
The charge carries a maximum sentence of five years in prison.
Patel was sent back to the US by his employer but he travelled to Jordan instead where he was arrested and eventually deported.
His parents spoke with the FBI about their son after learning he was in Jordanian custody and said he had become "obsessed with Islam."
An investigation of Patel's room and computers disclosed evidence that he had downloaded three copies of an online magazine produced by the Islamic State and searched for how to join the group.
On another occasion, speaking to an undercover agent, Patel expressed desire to do something "bigger, better and more purposeful," like dying for Allah, the report added.
He told the agent about his desire to see a holy war between Muslims and non-Muslims.
"He sang an Islamic State fight song to the source and recalled making a replica of the group's flag, which he wanted to replace his neighbour's American flag with," the report said.
"He wanted to blend into society and do something 'glorious'," FBI Special Agent Thomas Pembroke wrote in an affidavit unsealed Thursday in US District Court.
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