He said it had recently received an award from President Pranab Mukherjee, not for "slogans in praise of (Parliament attack convict) Afzal Guru" but for "good quality work and research".
He said in the Lok Sabha that around 100 professors belonging to the SCs/STs and 25-30 physically-disabled ones would be joining it soon.
Javadekar, while replying to a debate on a bill on the institutes of national importance, was responding to Congress leader Mallikarjun Kharge who asked why he was isolating JNU.
Javadekar was clearly referring to last year's controversy that erupted after alleged slogans in praise of Guru who was hanged a few years back.
Describing JNU as a "top university", Javadekar said it got the award "because of the good quality work and research" done by it.
Javadekar was replying to the debate on The National Institutes of Technology, Science Education and Research (Second Amendment) Bill, 2016, which seeks to amend the National Institutes of Technology, Science Education and Research Act, 2007 (NITSER Act).
"100 SC/ST professors would be joining JNU very soon.. 25-30 physically disabled (professors) would be also joining soon," he said.
The minister also admitted that there were vacancies in the central and state universities and said the government was working towards filling these up.
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