"Providing security for our citizens means that the fight against Islamist terrorism is our first priority," he told some 200 French ambassadors gathered in Paris.
Since early 2015, France has suffered a series of terror attacks that have claimed more than 230 lives, making it the worst-affected country in western Europe.
"There's no place for naivete, nor for fear of Islam which confuses Islamism and Islamic," he said, calling assuring the security of the French the "raison d'etre" of the country's diplomatic efforts.
He also argued against taking sides in the regional power battle between Iran, a majority Shiite Muslim country, and Saudi Arabia, a Sunni power.
"Some have chosen (their camp). It's a mistake. The strength of our diplomacy is to speak to all sides," he said.
The 39-year-old leader also insisted there was no alternative to the 2015 nuclear deal with Iran, which has been fiercely opposed by US President Donald Trump.
"There is no alternative to the non-proliferation agenda. It enables a constructive and demanding relationship with Iran," he said.
France's youngest ever president has shown determination to restore what he sees as the country's declining international prestige under his predecessor, the Socialist Francois Hollande.
He has won kudos for making a bold start on the international stage, hosting both Trump and Russian President Vladimir Putin within his first weeks in office.
He raised human rights with Putin and spoke out against Trump's decision to withdraw the United States from the Paris accord on fighting climate change.
The leaders backed proposals to screen asylum seekers in Chad and Niger as a way to prevent thousands from taking perilous journeys across the Mediterranean.
Macron said today he would soon travel to Burkina Faso to continue building a new relationship with Africa, "a continent of the future" which "we cannot abandon".
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