Nisar yesterday said that Federal Investigation Agency has been directed to accelerate probe into the treason case against Musharraf and present the report as soon as possible.
He said 70-year-old Musharraf's name was on Exit Control List and it would not be removed till a court decided on it.
Musharraf is currently seeking a bail in Lal Masjid case after being granted bail in three other cases and his lawyer said on Wednesday he was cleared to leave the country.
This had given rise to speculation about his possible release after nearly six months of house arrest but he was subsequently arrested for the killing of the Lal Masjid cleric.
Musharraf, who was then army chief and President, had ordered the crackdown on the Lal Masjid in 2007. About 100 people, most of them extremists, were killed in the operation.
Nisar's remarks came on the anniversary of a Musharraf- led coup that overthrew Nawaz Sharif on October 12, 1999.
The Supreme Court on July 3 had disposed of petitions calling for registration of a treason case against him and directed the government to continue approaching the matter in light of its official statement presented to the court.
The government had in its statement said that it would proceed in accordance with the law and prosecute Musharraf for treason under Article 6 of the Constitution.
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