He said the Muslim community today has two views on Naik, with half of them saying his preachings are right and the rest contending he is wrong.
The controversial Islamic preacher, whose speeches allegedly inspired some of the militants involved in the Dhaka carnage, is currently facing multiple probes.
Apart from coming under scanner in India, Bangladesh has also banned the broadcast of Naik's Peace TV, cracking down on the channel and radical sermons by the 'televangelist'.
"So, why this debate? Why should the community debate for a single man? It is unwarranted. It would create more rift and sort of legal and law and order problems seen in other countries like Iraq, Iran...Everywhere we are seeing because of division in the community. We want to pre-empt this and the responsibility of pre-empting is Government of India's," Khan told PTI here.
The central government, through its agencies, should analyse his speeches on a war-footing, and book him according to law if he has stated anything against national interest or against the law and order or encouraging youth to take up arms against the country or anybody, he said.
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Khan noted that religious leaders, whether Hindu, Muslim or Christian, interpret scriptures in their own way and they have followers which include a few "black sheep".
"Something (interpretation) may be within the parameter and something may be slightly away. So, if Zakir Naik is also interpreting the religion in a way which is detrimental to the religious aspects, Islamic scholars should also take cognisance and explain to him and have a debate on what way he is doing wrong," he said.
He alleged that there are cases where RSS and Bajrang Dal-aligned people and some elements in Christian community were involved in different crimes.
"So, that does not mean the whole institution is bad. We have to remove the black sheep and set right the organisations," Khan added.
