The funerals came as Israeli border guards shot dead a suspected Palestinian knife attacker at a checkpoint between the West Bank and Israel after he tried to stab one of them, police said.
The surge of unrest since early October has triggered fears of a third Palestinian intifada, or uprising, against Israeli occupation by a generation gripped by despair and anger over stalled peace efforts.
Nine Israelis, 66 Palestinians and an Arab Israeli have been killed since a wave of attacks and violent clashes broke out a month ago in Jerusalem.
Thousands of Palestinian mourners gathered for the funerals of the five teenagers, including two girls, in Hebron, a powder-keg in the decades-old Palestinian-Israeli conflict.
They waved Palestinian flags and chanted "we will die but Palestine will live on".
Clashes broke out between Palestinian stone throwers and Israeli soldiers as the funerals got underway.
One Palestinian was buried separately in Israeli-annexed east Jerusalem while another was laid to rest late Friday in the West Bank town of Jenin.
On Friday Israel said it had released the bodies of seven Palestinians, apparently to ease tensions.
Families of children killed in the violence have clamoured for their bodies to be released and accuse authorities of "collective punishment".
Ziad Natsheh, who buried his son Tareq, 17, in Hebron on Saturday, said as he received condolences from mourners that he was relieved to give him a "dignified burial".
"Living in a country where there is nothing else but war, everyone expects to know death, injury or lose a child," said Natsheh.
Hebron -- home to a shrine known to Jews as Cave of the Patriarchs and to Muslims as the Ibrahimi Mosque -- is a city of 200,000 Palestinians.
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