The bid from KAI and the US aerospace giant, which is subject to a screening process before being officially approved, was always seen as the favourite for the 8.6 trillion won (USD 7.8 billion) deal over a rival bid by civilian carrier Korean Air (KAL) teamed with Airbus.
The Defence Ministry also approved a separate USD 1.28 billion deal to buy Patriot PAC-3 missiles and upgrade its air defence system aimed at intercepting North Korean ballistic missiles.
"We have chosen KAI as the preferred bidder based on our review of... Cost, development plans and development capabilities of the two bidders," the Defense Acquisition Program Administration (DAPA) said in a statement.
"We are planning to sign the (final) contract during the first half of this year after negotiating with the preferred bidder over technology... And the price," it said.
The South Korean government is to provide 60 per cent of the development costs, with the rest to be shared by the winning consortium and Indonesia, whose involvement is the result of a bilateral defence treaty.
Lockheed, which won a contract in 2013 to sell 40 F-35A joint strike fighters to South Korea, has promised to transfer key technologies for the KF-X project to Seoul.
South Korea's military procurement needs, especially where the air force is concerned, have overwhelmingly been met by US suppliers in the past - a reflection of their close military alliance.
KAL had talked up its bid by highlighting the technical support available from Airbus, which is part of the European consortium that developed the Eurofighter.
The defence ministry's request for the KF-X project required a new design, although experts say a heavily modified version of an existing fighter model would also be acceptable.
DAPA officials said South Korea would also buy an unspecified number of "hit-and-kill" PAC-3 missiles from Lockheed Martin by 2020 to improve its anti-ballistic missile capabilities.
US defence contractor Raytheon has been selected to upgrade South Korea's PAC-2 fire control system to launch both PAC-2 and PAC-3 missile, DAPA spokesman Kim Si-Cheol told reporters.
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