Sirisena's remarks came as Human rights groups filed lawsuits in Brazil and Colombia against Sri Lanka's ambassador in Latin America Jagath Jayasuriya.
Jayasuriya was a commander in the final stages of the civil war with separatist Tamil rebels in 2009.
Tens of thousands of Tamils - and the rebel leadership - were killed at the end of the conflict, in which both sides were accused of atrocities.
"This was an action taken outside Sri Lanka by an NGO sympathetic to the LTTE. I will not bow to their commands," Sirisena said during his Freedom Party's 66th anniversary convention.
The president said when he took over in January 2015 from his predecessor Mahinda Rajapaksa Sri Lanka was on the verge of being slapped economic sanctions due to war crimes allegations being levelled through the UN human rights council resolutions.
"My government managed to stop that. The world leaders assured me support to carry on with reconciliation and protection of human rights," Sirisena stressed.
Sirisena's address came amidst speculation that some of his party members may leave the government to sit in opposition.
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