NIA sleuths found three arms -- a pistol, a double-barrel gun and a .315 rifle -- in possession of Razzaq Choudhary, a close aide of separatist leader Shabir Shah, officials said.
The arms were not seized as Choudhary produced licence for the weapons, they added.
An NIA spokesman said nine places in Kashmir and one each in Jammu and Gurugram (Haryana) were searched in connection with the Jammu and Kashmir terror funding case and channelling of funds through trade across the Line of Control (LoC).
Badgami, a prominent separatist Shia leader, and Sumji are part of the pro-Pakistan, Syed Ali Shah Geelani-headed faction of the Hurriyat Conference.
Shabir Shah is at present in judicial custody after the Enforcement Directorate arrested him last month in connection with an earlier case of money laundering.
He said the offices of the Chartered Accountants of Hawala operator Zahoor Watali and residences of suspect cross-LoC traders were also searched as they were suspected of fuelling secessionist and subversive activities in Kashmir Valley.
Watali, who is considered as a political broker, was arrested by the NIA last month.
The NIA registered a case on May 30 in which the leader of the Pakistan-based Jamaat-ud-Dawa and banned terrorist outfit Lashkar-e-Taiba, Hafiz Saeed, was named as an accused.
The NIA has arrested nine people in the case of alleged funding of terror and subversive activities in Kashmir Valley to fuel unrest there.
The case was registered for raising, receiving and collecting funds through illegal means, including hawala channels, for funding activities such as causing disruption in the valley by stone pelting, burning schools, damaging public property and waging war against India.
The searches were also part of the NIA's probe into alleged irregularities in the cross-LoC trade. In this connection, the NIA had carried out searches on traders at trade facilitation centres at Salamabad in North Kashmir's Baramulla district and Chakan-da-bagh in Poonch district of the Jammu region.
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