Rajapakse spent much of the three-day summit deflecting calls for an international inquiry into the bloody finale to Sri Lanka's civil war in 2009, in which the UN says as many as 40,000 Tamil civilians may have been killed.
London-based Amnesty International said Sri Lanka may regret having hosted the event "which has proved a PR disaster" for Colombo.
It and other rights groups said it was vital that pressure on the Rajpakse regime should not melt away once the bloc's leaders fly home.
British Foreign Secretary William Hague met rights activists in Colombo today in a sign of London's determination to keep the issue in the spotlight.
Rajapakse has been infuriated by British Prime Minister David Cameron's warning that he will lead a push for an international probe through UN bodies unless an internal inquiry produces credible results by March.
"We cannot and will not turn a blind eye to the abuses which occur whether they are about freedom of expression, impunity for disappearances or sexual violence, freedom from torture and the lack of accountability," Hague said after his meetings in Colombo.
But the leaders of other countries who did come to Colombo were much more wary of upsetting their hosts.
Australian Prime Minister Tony Abbott peppered calls for improvement in its rights record with an appeal to be "good mates" with Sri Lanka.
South African President Jacob Zuma refrained from criticising Colombo, but did offer "any assistance" in reconciliation efforts, based on his country's experience of addressing apartheid-era abuses through a truth and reconciliation commission.
But the Families of the Disappeared, a Colombo-based rights group, said Rajapakse could not be trusted to come up with results unless international pressure is applied.
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