"Given such numbers there is need for urgent humanitarian assistance, as some of the refugees are sick and have left all their belongings in Congo," Uganda Red Cross official Catherine Ntabadde told AFP.
Tallies made late yesterday estimated 55,000 refugees had crossed the border, up from 30,000 the day before, she added.
Refugees have streamed across the border into western Uganda's Bundibugyo district since the attack on Thursday, although the numbers of new arrivals crossing today had slowed to a trickle.
Thousands crowded into the grounds of schools in Bundibugyo, about 20 kilometres (12 miles) from the border with Congo, offered as a temporary shelter, with many building makeshift shelters or simply sleeping out in the open.
The Red Cross are working with the United Nations and other aid agencies to set up a camp further inside Uganda, although many refugees appeared reluctant to leave.
"The (Ugandan) government has found a transit camp eight kilometres (five miles) from Bundibugyo town ... There we can start registering them afresh," Ntabadde said.
Ugandan police however were encouraging people to move to the new camp, refugees said.
The town of Kamango in the northernmost part of DR Congo's North Kivu province was attacked and briefly occupied Thursday by a Ugandan-led rebel group, the Allied Democratic Forces (ADF).
Residents of Kamango said that public buildings and the hospital had been pillaged but no toll was given of possible casualties.
In Bundibugyo, refugees carried their belongings piled on their heads, including rolled-up mattresses, cooking pots and chickens.
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