A court statement said it was "compelling respondents to prevent President Omar Al-Bashir from the leaving the country until an order is made in this court".
A hearing in Pretoria High Court is set to take place later today.
The ruling came after the Southern African Litigation Centre, a legal rights' group, launched an urgent court application to force the authorities to arrest Bashir.
Bashir, who is wanted over alleged war crimes and crimes against humanity during the Darfur conflict, mostly travels to countries that have not joined the ICC, but South Africa is a signatory of the court's statutes.
The ICC said in a statement from its headquarters in The Hague that it "calls on South Africa... To spare no effort in ensuring the execution of the arrest warrants" against Bashir.
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