Khan, who had held the departments of Minority Affairs, Haj and Wakf during BJP rule, also resigned as a member of the state Legislative Council.
Soft-spoken Khan, a sociology professor, who had taught at the University of Agricultural Sciences here, was hand-picked by former Chief Minister B S Yeddyurappa who also made him a Minister.
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"Modi did not express regrets for the 2002 tragedy. We have to work together and stop Modi from becoming Prime Minister", Khan told reporters at the office of Karnataka Pradesh Congress Committee where KPCC President G Parameshwara welcomed him into the party.
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