A bench of Justices Ranjan Gogoi and M Y Eqbal also issued notice to the Centre on the plea challenging constitutional validity of certain penal provisions pertaining to offences of rioting and hate speech.
At the outset, senior advocate T R Andhyarujina, appearing for Swamy, said, "This man has been subjected to incredible harassment for giving lecture in a University."
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"We are issuing notice confined to prayer one and two (issues related to constitutional validity of certain penal provisions)," the bench said.
Later, the bench stayed the execution of the non-bailable warrant (NBW) for six weeks and allowed Swamy to move a competent court within that period.
Swamy had approached the apex court against the order of a trial court in Karimganj in Assam, issuing a NBW against him for failing to appear before it in a case of alleged hate speech.
The local court had issued summons to Swamy on March 19 on a complaint accusing him of allegedly delivering an inflammatory speech on March 15 at Kaziranga University.
The Karimganj court had ordered that the arrest warrant be complied with on or before June 30.
On May 21, a judge of the apex court had recused from hearing his plea challenging the validity of some penal provisions relating to "hate speech".
The BJP leader had also sought a stay on the order of Additional Judicial Magistrate, Karimganj, summoning him as an accused for the speech.
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