Ahead of Obama's arrival today evening, large numbers of security forces patrolled in the Kenyan capital, Nairobi.
Several US military aircraft were spotted flying around the city. There have also been significant military attacks on Islamic militant targets in Somalia in recent weeks.
Major Nairobi roads will be temporarily closed and authorities said the international airport will be closed at times coinciding with Obama's landing and departure Sunday for Ethiopia.
Safaricom, a mobile network operator, warned of disruptions while Obama is in Nairobi to meet entrepreneurs and hold talks with Kenyan President Uhuru Kenyatta.
Al-Shabab, which is linked to al-Qaida, has conducted major attacks in Kenya, including the 2013 attack on Nairobi's Westgate mall and an April attack in Garissa town that killed nearly 150 people.
This month, Somali officials said African Union and local troops seized Bardhere, one of the last major towns held by extremists in Somalia's southwest. A militant commander was also killed in a US drone strike, according to Somali and US officials.
"They are watching militants' movements towards Kenya so closely," said the official, who requested anonymity because he is not authorised to speak to the media.
Obama's schedule includes a Sunday address at a Nairobi stadium that will be broadcast live on Kenyan radio and television.
US Ambassador Robert Godec said attendance is by invitation only to representatives from "a wide range of Kenyan society" despite speculation that huge crowds would gather.
"We discourage people from coming to the venue if they're not explicitly invited," Godec said.
Sarah Obama, the matriarch of the Obama family, flew from the western Kenyan city of Kisumu to Nairobi today ahead of a meeting with the American president, Kenyan media reported.
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