Jayalalithaa had invited Prime Minister Narendra Modi to the oath-taking function after her win against DMK in the recently concluded Assembly elections.
Currently, the PM is on a visit to Iran and Naidu has been asked to represent the central government, sources said.
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She will be sworn-in for a second consecutive tenure along with 28 ministers.
It will be 68-year-old Jayalalithaa's fourth term in office. Her earlier tenures as Chief Minister were 1991-96, 2001-06 and 2011-16.
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