Duterte, who inspected the scene of last night's attack at a night market in downtown Davao city, said his declaration that covers the southern Mindanao region did not amount to an imposition of martial law.
It would allow troops to be deployed in urban centers to back up the police in setting up checkpoints and increasing patrols, he said.
An Abu Sayyaf spokesman, Abu Rami, claimed responsibility for the blast near the Jesuit-run Ateneo de Davao University and a five-star hotel, but Duterte said investigators were looking at other possible suspects, including drug syndicates, which he has targeted in a bloody crackdown.
"We're trying to cope up with a crisis now. There is a crisis in this country involving drugs, extrajudicial killings and there seems to be an environment of lawless violence," said Duterte, who served as mayor of Davao for years before elected to the presidency in June.
The attack came as Philippine forces were on alert amid an ongoing military offensive against Abu Sayyaf extremists in southern Sulu province, which intensified last week after the militants beheaded a kidnapped villager.
Some commanders of the Abu Sayyaf, which is blacklisted by the United States and the Philippines as a terrorist organisation for deadly bombings, ransom kidnappings and beheadings, have pledged allegiance to the Islamic State group.
The military, however, says there has been no evidence of a direct collaboration and militant action may have been aimed at bolstering their image after years of combat setbacks.
Communications Secretary Martin Andanar said the bomb appeared to have been made from a mortar round and doctors reported many of the victims had shrapnel wounds.
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