Officials monitoring the possible radiation leak said there was no danger to people or the environment at the the Department of Energy's Waste Isolation Pilot Plant, the nation's first repository to seal away radioactive waste, mostly plutonium, used for defence research and the production of nuclear weapons.
The waste is dumped 655 meters underground in disposal rooms excavated in an ancient, stable salt formation.
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It said no staffer was found to be contaminated by the radiation.
Employees on the surface were told to shelter in place as a precautionary measure and were cleared to leave the site starting at 0630 IST yesterday.
"We are continuing to monitor and we are emphasising that there is no danger to human health and the environment," WIPP spokeswoman Deb Gill told AFP.
The agency stressed that "no contamination has been found on any equipment, personnel or facilities."
As soon as the airborne radiation was detected underground at the site where the US government dumps low-grade nuclear waste, WIPP's ventilation system automatically switched to filtration mode in order to prevent air exchange with the surface.
The site was shut down and not performing active operations at the time, according to Gill.
Earlier this month, an underground blaze prompted the evacuation of a different part of the site, after a truck hauling salt caught fire. Several workers suffered smoke inhalation.
But officials said the blaze was nowhere near radioactive material.
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