In the capital Lisbon, between 3,000 and 4,000 cabbies were driving at a snail's pace through the city, according to the two main industry bodies organising the protest, Antral and the Portuguese Taxi Federation.
Some 1,000 protesters were also out in second city Porto, while around a hundred mobilised in the southern resort of Faro.
Lisbon taxi drivers adorned their cabs with black ribbons to signal a profession in "mourning". They stuck posters to their windows reading "Uber go home", "Uber is illegal" and "Uber is a national crime".
"The government has to stop Uber's operations, which represent unfair competition with the taxis," said Antral president Florencio Almeida.
"We don't need state subsidies, but we want the law to be enforced," he added.
Portugal's Socialist government last month announced 17 million euros (USD 19.4 million) of funding to boost the taxi sector in a bid to placate drivers angry at the rise of Uber, but the protesters say this is not enough.
"If the government doesn't prevent Uber from operating, they must be forced to pay insurance fees like us."
Another protester, 80-year-old Antonio Nunes, said the company was guilty of "theft" for not paying more tax in Portugal.
Uber transfers its Portuguese earnings to the Netherlands under complex international tax arrangements, though it does pay VAT in Portugal.
The Portuguese Taxi Federation says business has dropped 20 percent since Uber arrived in the country in July 2014.
Business has boomed for Uber since it launched in San Francisco in 2011.
Licensed taxi drivers, who must undergo hundreds of hours of training in some countries, often complain that Uber drivers do not pay for permits or taxes.
Uber says it is not a transport company like taxi firms, and that it simply connects drivers with passengers.
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