An auto-rickshaw driver died at southeastern Noakhali district when protesters threw stones at him for defying the hartal call.
"A stone hit him on the head and doctors pronounced him dead," a police officer told reporters.
Jamaat activists also turned violent at several other areas of the country on the first day of their 48-hour general strike.
The strike prompted most private cars to stay off the road.
The TV channels reported incidents of clashes in central Comilla, northwestern Bogra, Natore and Rajshahi and southwestern Barisal and Satkhira. Some 10 policemen were injured in attacks by demonstrators, who also damaged 20 vehicles.
The Jamaat strike came a day after the Supreme Court handed down death penalty to assistant secretary general of the party Abdul Quader Mollah for 1971 war crimes, revising a special tribunal verdict which had sentenced him to life imprisonment earlier.
Mollah's lawyers said they have decided to appeal in the Supreme Court against the verdict.
"After getting full text of the verdict we will submit a review petition (before the apex court itself) and also pray for staying the execution process until the review petition is settled," defence counsel Tajul Islam said.
