"A detachment of our army's anti-terrorist force suffered a murderous attack which claimed the lives of 12 of our valiant soldiers and left some wounded," said President Rock Marc Christian Kabore yesterday, in an address to the nation.
"I strongly condemn this horrible attack which shows the cruelty of these perpetrators," added Kabore, who did not specify the number of injured.
Two more men were missing after around 40 jihadists riding pick-up trucks and motorbikes attacked the army's Nassoumbou base some 30 kilometres (18 miles) from the Burkina-Mali border, the high commissioner of Soum province, Mohamed Dah, earlier told AFP by phone.
Dah added that at least five attackers were killed although their bodies were removed from the scene by other assailants on motorcycles.
A security source who asked not to be named said the assailants were wearing turbans and waving black jihadist flags.
Troops at the Nassoumbou base are part of a 600-strong anti-terrorist battalion that was deployed in January 2013 when France sent in troops to counter a jihadist insurgency in northern Mali.
But in January this year, three jihadists left dozens of people dead and 71 injured in an attack in the heart of the capital.
Thirty people were killed when gunmen stormed the four-star Splendid Hotel and a nearby cafe in Ouagadougou.
The Al-Qaeda in the Islamic Maghreb (AQIM) group behind a string of attacks in west Africa in recent years claimed responsibility for the strikes on the venues which were popular with Westerners.
In October, Kabore had called on his countrymen to help fight back against the mounting jihadist threat.
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