He was charged as part of a probe into the mysterious death of Sankara, a revolutionary figure who is still a hero to many in west Africa. He was killed, along with 12 others, during a coup that brought his former comrade-in-arms Blaise Compaore to power.
Diendere "was charged on November 12 in the Sankara case," an official at the military prosecutor's office said yesterday of the investigation which began in March, some five months after Compaore was overthrown in a popular uprising.
Diendere, who was chief-of-staff under Compaore, mounted a putsch on September 17, using crack troops from a presidential guard loyal to the ousted head of state.
The coup was thwarted by street protesters and by support from the army, which attacked the plotters' barracks. At least 11 people were killed and 271 were injured in the demonstrations.
The fate of Sankara -- dubbed "Africa's Che Guevara" by admirers -- was a taboo subject in Burkina Faso for 27 years until Compaore's overthrow. According to his death certificate, the 37-year-old former army captain died of "natural causes".
An autopsy carried out on his remains in May, nearly three decades after his death, showed it was "riddled with bullets", his family's lawyers said in October.
Burkina Faso's government welcomed the move, saying it was "a step forward in the Thomas Sankara investigation" and that the justice system was "on track to respond to one of main hopes of the people who have risen up: an end to impunity."
The failure of the September putsch has enabled Burkina Faso to push ahead with presidential and parliamentary elections, deemed vital for stabilising the poor, landlocked Sahel state.
Diendere has already been charged with crimes against humanity over the coup.
Compaore himself has also been suspected of ordering the murder of Sankara.
In October, military justice chief Colonel Sita Sangare said he has not ruled out prosecuting the former president in the case.
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