He reached the holy Sikh shrine shortly after 6 AM and spent around 15 minutes inside its sanctum sanctorum.
Wearing a grey turban and a white shirt, Sajjan took a round of the Harmandir Sahib's complex and spent over an hour in its premises.
SGPC president Kripal Singh was also present when the minister reached the shrine.
Sajjan is a Sikh whose native village, Bambeli, falls in Hoshiarpur district of Punjab.
The Canadian defence minister reached the holy city of Amritsar from New Delhi last evening.
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