The lengthy article in the People's Daily, China's most-circulated newspaper and the mouthpiece of the ruling Communist party, argued that the country may have rights to the Ryukyu chain, which includes Okinawa.
The island is home to major US air force and marine bases as well as 1.3 million people, nearly all of whom are Japanese nationals and speak Japanese.
The authors of the article, two scholars at the Chinese Academy of Social Sciences, considered China's top state-run think-tank, said the Ryukyus were a "vassal state" of China before Japan annexed the islands in the late 1800s.
The article also repeated Chinese government arguments for China's historical claims over a set of tiny uninhabited islets in the East China Sea known as Diaoyu in Chinese and Senkaku in Japanese.
The two nations have stepped up a war of words in recent months, with Beijing's vessels regularly entering the waters around the Tokyo-controlled islands, stoking fears of armed conflict.
In Tokyo, Chief Cabinet Secretary Yoshihide Suga dismissed the article as "injudicious".
Questions over Japan's right to Okinawa were probably aimed at raising the stakes in the East China Sea dispute, said Willy Lam, an expert on Chinese politics at the Chinese University of Hong Kong.
"I think this is psychological warfare," he said.
"The major point is to put pressure on Japan so that the Japanese administration will be forced to make concessions over the Senkaku islands."
Chinese foreign ministry spokeswoman Hua Chunying repeatedly refused to give a direct answer when asked whether Beijing considers the Ryukyu chain a part of Japan at a regular press briefing today.
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