The coast guard said it remained unclear how many people were on the wooden boat when it capsized and coast guard boats, a helicopter and vessels from the European border agency Frontex searched through the night in stormy seas for more survivors.
Two young boys and a man died in that incident, but their nationalities were not yet known, it said.
The International Organization for Migration said in a statement some sources told it 200 people were on the boat when it went under yesterday, while others had told it 300.
The accident raised the total death toll in the eastern Aegean Sea yesterday to 11, as thousands of people continued to head to the Greek islands in frail boats from Turkey despite worsening weather conditions as winter set in.
Greece is the main entry point for people from the Middle East and Africa seeking a better future in Europe. Well over half a million have arrived so far this year.
Another three children and a man died off the coast of Samos, while one woman and two children drowned off the islet of Agathonissi.
Greece's merchant marine minister, Thodoros Dritsas, expressed sorrow about the deaths and called for more coherent European Union policies to stop migrants risking their lives by paying smuggling gangs to ferry them to Greece in unseaworthy craft.
"The coast guard's admirable, constant struggle to rescue refugees at sea is, unfortunately, tending of late to turn into a constant and agonizing operation to locate and recover drowned refugees," he said.
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