The Sri Lanka Muslim Congress (SLMC) said it was also boycotting parliament today as a protest against Colombo's failure to rein in a hardline Buddhist group widely accused of sparking the clashes.
Justice Minister and SLMC leader Rauf Hakeem told reporters Rajapakse's administration was at fault for letting the bloodshed escalate.
"We are convinced that the government did not do anything to prevent the violence against the Muslims," said Hakeem, who is the most senior Muslim in Rajapakse's cabinet.
Hundreds of troops were deployed to help police after the extremist Buddhist Force, or BBS, marched in neighbouring Alutgama on Sunday, with clashes breaking out as it claimed its procession was stoned by Muslims.
At least four people were killed and nearly 80 seriously wounded, while dozens of homes, businesses and vehicles were torched, with violence spreading to Beruwala on Monday.
"I will get the military to help you rebuild your homes and shops," Rajapakse said, adding that he will hold an impartial inquiry.
The president made no reference to the SLMC demands to allow two UN experts -- the Special Rapporteur on freedom of religion or belief and the Special Rapporteur on minority issues -- to visit the island.
"The government has for some time denied them visas to enter the country. But there is an opportunity now for the government to demonstrate its bona fides and allow the two UN experts to come here and start an investigation," Hakeem said.
The minister spoke with reporters as police announced they had arrested 49 people -- both Buddhists and Muslims -- overnight.
The 57-nation Organisation of the Islamic Cooperation urged authorities to investigate and take action against those responsible.
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