"Our Constitution is a testament to the accommodation of our differences within the framework of an overarching idea of India," Mukherjee said, delivering the first Ramnath Goenka Memorial Lecture.
He said India's pluralism and its social, cultural, linguistic and racial diversity have been the bedrock of Indian civilisation.
"That's why we need to be sensitive to dominant narratives, of those who make the loudest noise, drowning out those who disagree.
He said Indian civilisation has always celebrated plurality and promoted tolerance.
"As I have said before, discussion, dissension are crucial to public debate for decision-making in a vibrant, healthy democracy such as India's. There should always be room for the argumentative Indian but not for the intolerant Indian.
"That would be contrary to the spirit of the Constitution of India, to the very idea of India," Mukherjee said.
He said people here and globally are living in challenging times.
Mukherjee said the spirit of tolerance and accommodation towards each other and those who differ from us is "what makes us Indians".
Talking about the role of the media, he said the press will be failing in its duty if it does not pose questions to the powers that be and it will have to simultaneously judge the frivolous from the factual and publicity from reportage.
"However, such inquiry should not be blinkered by biases or resisted with a closed mind. Indian history and centuries' old civilisation is replete with examples of a willingness of the people to, as I have said, 'doubt, disagree and dispute intellectually'.
"This is the bedrock of our nation, our Constitution is a testament to the accommodation of our differences within the framework of an overarching idea of India," the president said.
"The question that faces all of us including the media is whether we will choose to define ourselves as a nation enriched by the diversity of views or allow partisan views to dominate our national narrative?" Mukherjee asked.
He said if the media believes in the freedom of expression, a free and a fearless independent media, it must choose to reflect a plurality of opinions for that is what breathes life into our democracy and has defined us as Indians.
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