Negotiations began in August on a defence agreement that would allow larger numbers of US troops to have temporary access to Philippine military camps and bring in aircraft, ships and other equipment. US troops have already been allowed to train Filipino anti-terrorism forces in the southern Philippines since 2002.
Defence Secretary Voltaire Gazmin said one key issue involves a US failure to clearly accept Philippine control over and access to temporary American facilities to be set up in local camps.
"You can say there is a kind of an impasse, a disagreement," he said, but added he was optimistic that the differences could be overcome.
US Embassy officials did not immediately comment.
Philippine negotiators have been told to ensure that any agreement would comply with the Philippine Constitution and laws and that the US would not have exclusive use of any facility established within selected Philippine military camps, Philippine officials have said.
The next negotiating session has not been scheduled. The differences mean an agreement may be reached next year at the earliest.
The Philippines' desire to bolster its defence while engaged in territorial disputes in the South China Sea has dovetailed with Washington's intention to pivot away from years of heavy military engagement in Afghanistan and Iraq to Asia.
Hundreds of American troops have been stationed in the southern Philippines for counter-terrorism training since 2002.
The presence of foreign troops is a sensitive issue in the Philippines, a former American colony. The Philippine Senate voted in 1991 to close down major US bases. A pact ratified in 1999 allowed temporary visits such as joint exercises.
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