The mobile app was made available in Cambodia on Saturday alongside a host of other Southeast Asian nations, with fans flocking to well known landmarks in recent days.
But the game -- which encourages users to hit the pavements in search of the virtual creatures -- has sparked anger after players appeared at Tuol Sleng prison, where up to 15,000 people were sent to their deaths during the Khmer Rouge's 1975-79 rule.
"It is a place of suffering. It is not appropriate to play the game there," he said, calling for the museum to be excluded from the game's maps.
Youk Chhang, director of the Documentation Center of Cambodia, which researches the Khmer Rouge atrocities, echoed Bou Meng's call.
The museum is "not a shopping mall nor a playground to catch Pokemon. It is a grave site," he said.
Chhay Visoth, the director of the Tuol Sleng Genocide Museum, confirmed some visitors had played Pokemon Go inside the prison.
Security guards there said they had chased players away from inside the museum. But on Wednesday afternoon players were still searching for Pokemon outside the prison.
"I found four Pokemon monsters, but I don't need to go inside Tuol Sleng," a player, who asked not to be named, told AFP while playing next to the museum wall.
Since its global launch, Pokemon Go has sparked a worldwide frenzy among users who have taken to the streets with their smartphones.
While it has been praised as a fun way to get people outdoors, it has also attracted safety and security warnings.
It is not the first time players have turned up at sensitive historical sites.
A French World War I memorial has been removed from Pokemon Go following complaints about gamers gathering to do battle at a site containing the remains of 130,000 soldiers.
