Almost six million people across the country were confined indoors for 72 hours from Friday while 28,000 volunteers went door-to-door, giving out advice and identifying new suspected cases and deaths that had been kept from the authorities.
"Over 92 bodies were discovered nationwide during the three-day lockdown of the country," Karamoh Kabbah, the deputy minister for political affairs, told a news conference in the capital Freetown.
He said 77 of the bodies had been collected in the Western Area, a division including the city of 1.2 million and its immediate surroundings.
The deadliest Ebola epidemic on record has infected almost 6,000 people in west Africa and killed nearly half of them, according to the World Health Organisation's latest figures.
The fever the virus causes can fell its victims within days, causing severe muscle pain, vomiting, diarrhoea and - in many cases - unstoppable internal and external bleeding.
In Sierra Leone, Ebola has infected 1,813 people, killing 593.
Kabbah confirmed an earlier estimate that the door-to-door teams had managed to get to around 80 percent of households in a country where a large proportion of the population live in remote and sometimes inaccessible villages.
Health Minister Abubakarr Fofanah said not all the bodies collected had been confirmed as Ebola victims.
"Even prior to the outbreak, people were dying from tuberculosis, malaria, hypertension and even as a result of old age," he said.
"While government does not intend to massage the figures of death caused by Ebola, it is also mindful of the fact that there are many other causes of death in the country.
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